CRyPTIC dataset dashboard

A summary of CRyPTIC dataset v3.4.1

This overview uses an inner join of DST_SAMPLES and GENOMES on UNIQUEID. The map uses the ISO 3166-1 alpha-3 COUNTRY_CODE in DST_SAMPLES. The dataset is CRyPTIC v3.4.1, released 12 September 2026. Records without a country code are excluded from the map and country breakdown. Read-count plots show the distribution of MYCOBACTERIAL_READS in the joined dataset.

Dataset snapshot

53,897 rows in the inner join  ·  44,229 with a mappable country  ·  13 reported lineage labels

Global sample distribution

ISO 3166-1 alpha-3 country code is present for 44,229 of 53,897 joined records (82.1%); records without a code are omitted.

Lineage distribution by country

Stacked counts for the 12 countries with the most records having a mappable country.

Mycobacterial read counts

53,897 joined samples; median 3,145,272, interquartile range 2,059,892–4,625,654.

Read counts across common lineages

Box plots show median and interquartile range; whiskers use the standard 1.5×IQR rule. Seven most frequent lineages are shown.

Dashboard source: Zenodo v3.4.1.